HARs

2xHAR.5

Bracketed genes    DACH1, MZT1

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (2)

human

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (3)

2xHAR.20

Aliases    HAR 80, HAR 19

Bracketed genes    INSIG2, EN1

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (12)
  • neural tube (8)
Suggestive activity domains ?
  • midbrain (7)
  • branchial arches (3)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (6)
  • neural tube (5)
Suggestive activity domains ?
  • midbrain (3)

HAR25

Human–Chimp difference    Suggestive

chimp

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (4)
  • midbrain (2)
  • hindbrain (1)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • eye (6)
Suggestive activity domains ?
  • neural tube (7)
  • hindbrain (4)
  • forebrain (3)
  • midbrain (3)
  • limb (3)

HAR34

Bracketed genes    MPDZ, LINC00583

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (5)
  • cranial nerve (3)
  • face (5)
Suggestive activity domains ?
  • neural tube (3)
  • eye (2)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (7)
  • cranial nerve (5)
  • face (7)
Suggestive activity domains ?
  • neural tube (4)
  • eye (4)

2xHAR.46

Bracketed genes    CDH4, RP11-429E11.3

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • dorsal root ganglia (6)
  • motor ganglia (6)
  • somites (4)
Suggestive activity domains ?
  • neural tube (6)
  • branchial arch (4)
  • midbrain (3)
  • ear (1)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • dorsal root ganglia (4)
  • motor ganglia (4)
  • somites (4)
Suggestive activity domains ?
  • branchial arch (3)
  • midbrain (2)

HAR69

Human–Chimp difference    No

human

Development stage    E11.5

Expression    No

HAR in genome    click here

2xHAR.90

Bracketed genes    PRDM8, FGF5

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    No

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (2)

human

Development stage    E11.5

Expression    No

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (1)

2xHAR.93

Bracketed genes    ZFHX3, C16orf47

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • dorsal root ganglia (3)
  • trigeminal (2)
Suggestive activity domains ?
  • eye (1)
  • limb (3)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Suggestive activity domains ?
  • eye (1)
  • trigeminal (1)
  • dorsal root ganglia (1)

2xHAR.99

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • neural tube (3)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (2)

2xHAR.114

Bracketed genes    MYLK2, FOXS1

Human–Chimp difference    Suggestive

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • limb (7)
  • neural tube (4)
Suggestive activity domains ?
  • midbrain (4)
  • hindbrain (3)
  • dorsal root ganglia (3)
  • heart (3)
  • eye (3)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • limb (14)
  • neural tube (6)
Suggestive activity domains ?
  • midbrain (7)
  • hindbrain (5)
  • heart (4)
  • neural tube (6)
  • dorasl root ganglia (3)

2xHAR.116

Bracketed genes    CADM1, BUD13

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (7)
Suggestive activity domains ?
  • midbrain (2)
  • neural tube (4)
  • eye (3)
  • dorsal root ganglia (3)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (7)
Suggestive activity domains ?
  • midbrain (2)
  • neural tube (5)
  • eye (1)
  • dorsal root ganglia (2)

2xHAR.122

Bracketed genes    NPAS3, SPTSSA

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    No

HAR in genome    click here

Suggestive activity domains ?
  • branchial arch (2)
  • torso (1)

human

Development stage    E11.5

Expression    No

HAR in genome    click here

Suggestive activity domains ?
  • torso (1)

2xHAR.128

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • neural tube (3)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • neural tube (3)

2xHAR.138

Aliases    HAR 29

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (6)
  • dorsal root ganglia (3)
  • midbrain (2)
  • forebrain (4)

human

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (4)
  • forebrain (3)
  • midbrain (2)
  • dorsal root ganglia (2)

2xHAR.164

Bracketed genes    GPR39, LYPD1

Human–Chimp difference    Suggestive

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (14)
  • midbrain (15)
  • hindbrain (12)
  • neural tube (13)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (5)
  • midbrain (5)
  • hindbrain (5)
  • neural tube (5)

2xHAR.170

Bracketed genes    GALNT10, SAP30L

Human–Chimp difference    Suggestive

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (4)
  • neural tube (4)
Suggestive activity domains ?
  • eye (2)
  • torso (2)
  • limb (1)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (8)
  • midbrain (4)
  • hindbrain (4)
Suggestive activity domains ?
  • dorsal root ganglia (4)
  • limb (2)
  • face (4)
  • branchial arch (2)
  • eye (4)

2xHAR.222

Bracketed genes    DYRK1A, KCNJ6

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • midbrain (2)
  • neural tube (1)
  • trigeminal (1)
  • dorsal root ganglia (1)
  • branchial arch (1)
  • hindbrain (1)
  • eye (1)

human

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • forebrain (2)
  • midbrain (3)
  • hindbrain (1)
  • neural tube (6)
  • face (2)
  • limb (2)
  • heart (3)

2xHAR.238

Bracketed genes    GLI2, TFCP2L1

Human–Chimp difference    Suggestive

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (4)
  • hindbrain (8)
  • neural tube (7)
Suggestive activity domains ?
  • midbrain (6)
  • dorsal root ganglia (4)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • forebrain (10)
  • hindbrain (9)
  • neural tube (8)
Suggestive activity domains ?
  • midbrain (3)
  • limb (3)
  • dorsal root ganglia (5)

2xHAR.240

Bracketed genes    GTDC1, ZEB2

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • cranial nerve (4)
Suggestive activity domains ?
  • ear (4)
  • neural tube (4)
  • branchial arch (2)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • cranial nerve (3)
Suggestive activity domains ?
  • ear (3)
  • neural tube (2)
  • branchial arch (3)

2xHAR.243

Bracketed genes    MEIS2, TMCO5A

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    No

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (2)

human

Development stage    E11.5

Expression    No

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (2)

2xHAR.274

Bracketed genes    SDCCAG8, AKT3

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • hindbrain (4)
Suggestive activity domains ?
  • neural tube (3)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Suggestive activity domains ?
  • hindbrain (2)
  • neural tube (2)

2xHAR.283

Bracketed genes    CRB2, DENND1A

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • midbrain (1)
  • neural tube (2)
  • limb (2)

human

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • midbrain (2)
  • neural tube (2)
  • limb (1)

2xHAR.287

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    No

HAR in genome    click here

human

Development stage    E11.5

Expression    No

HAR in genome    click here

2xHAR.332

Bracketed genes    ZRANB1, CTBP2

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (2)
  • midbrain (2)
  • dorsal root ganglia (2)

human

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (3)
  • midbrain (2)
  • dorsal root ganglia (1)

2xHAR.349

Bracketed genes    RARB, TOP2B

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • face (6)
  • torso (4)
Suggestive activity domains ?
  • branchial arches (3)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • face (2)
  • torso (2)
Suggestive activity domains ?
  • limb (2)

2xHAR.374

Bracketed genes    LIPG, ACAA2

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Suggestive activity domains ?
  • trigeminal (2)
  • neural tube (2)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Suggestive activity domains ?
  • trigeminal (2)
  • midbrain (3)
  • neural tube (1)
  • forebrain (2)

2xHAR.377

Bracketed genes    PANK3, SLIT3

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    No

HAR in genome    click here

human

Development stage    E11.5

Expression    No

HAR in genome    click here

2xHAR.384

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (1)

human

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (2)

2xHAR.408

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • neural tube (3)
Suggestive activity domains ?
  • forebrain (3)
  • midbrain (3)
  • neural tube (3)
  • torso (2)
  • dorsal root ganglia (1)

human

Development stage    E11.5

Expression    Yes

HAR in genome    click here

Consistent activity domains ?
  • neural tube (5)
Suggestive activity domains ?
  • forebrain (1)
  • midbrain (3)
  • neural tube (5)
  • torso (2)
  • dorsal root ganglia (2)

2xHAR.482

Human–Chimp difference    No

chimp

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • neural tube (3)
  • torso (3)
  • branchial arch (2)
  • eye (2)

human

Development stage    E11.5

Expression    Suggestive

HAR in genome    click here

Suggestive activity domains ?
  • branchial arch (1)
  • neural tube (2)
  • eye (1)