Please cite the the paper if you use these tools or data in your research.
Capra JA, Williams AG, and Pollard KS. ProteinHistorian: Tools for the Comparative Analysis of Eukaryote Protein Origin. PLoS Computational Biology, In Press, 2012.
If you have any questions or problems, please contact us at .
Data and Source Code
- ProteinHistorian 1.0 (6.5 Mb)
This archive contains the python source code for ProteinHistorian. See the README for documentation and usage examples. The program is free and licensed under the GNU General Public License (GPL); see the official GNU website for more information.
Users who wish to use their own protein family classifications or species trees when performing age analysis, should download the source code and follow the instructions in the README.
- ProteinHistorian_databases.tar.gz (110 Mb)
This archive contains pre-computed protein ages for 32 eukaryotic species based on several external databses of protein families and ancestral family reconstruction algorithms (see the paper and Methods). Note that the "age" of a protein can differ considerably depending on the database used.
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